• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
Gluten-Free DIYers
  • Home
  • About
  • Recipes
    • Facebook
    • Instagram
    • Pinterest
menu icon
go to homepage
  • Recipe Index
  • DIY Gluten-Free Blends
  • About
  • Subscribe
  • Contact
    • Facebook
    • Instagram
    • Pinterest
  • subscribe
    search icon
    Homepage link
    • Recipe Index
    • DIY Gluten-Free Blends
    • About
    • Subscribe
    • Contact
    • Facebook
    • Instagram
    • Pinterest
  • ×
    • a glass dish with golden oats and strawberry-rhubarb filling oozing through, with two scoops of ice cream on top
      Gluten-Free Strawberry Rhubarb Crisp
    • a whole gluten-free vegan apple pie with a lattice, next to apples, cinnamon and a pie cutter.
      Gluten-Free Vegan Apple Pie
    • a bowl of flour with a black whisk
      Gluten-Free & Dairy-Free Pastry Flour Mix
    • a pie cooling on a rack, with three little fish stamped on the golden crust
      Gluten-Free Salmon Pie, a Traditional French Canadian Fish Pie
    • a gluten-free sourdough baguette, deep golden-red, with a knife and several cut slices.
      Gluten-Free Sourdough Baguette, Rustic and Crusty
    • a gluten-free funfetti cake, covered in sprinkles, with frosting swirls
      Gluten-Free Funfetti Cake That All Kids Will Love!
    • a hand holding a gluten-free vanilla cupcake with a bite taken, showing a fluffy airy crumb with vanilla bean specks
      Gluten-Free Vanilla Cupcakes, With a Perfect Flat Top
    • a cooling rack with six gluten-free oatmeal raisin cookies, and a cinnamon stick
      Gluten-Free Oatmeal Raisin Cookies, Chewy Goodness!
    • a close up of a decorated gluten-free ube cake, white and purple.
      Gluten-Free Ube Cake With Marshmallows
    • a gluten-free tourtiere on the counter, with a pie server scooping a slice decorated with a maple leaf
      Gluten-Free Tourtiere, a French Canadian Meat Pie
    • a stack of gluten-free buttermilk pancakes on a plate, with strawberries and syrup
      Gluten-Free Buttermilk Pancakes, Super Fluffy
    • a round gluten-free pizza on a cutting board, with a hand grabbing a slice
      Gluten-Free Sourdough Pizza Crust, For Using Up Discard
    Home » Other Gluten-Free Baked Goods

    Easy Gluten-Free Carrot Muffins With Apples

    Published: Dec 27, 2023 · Modified: Jun 2, 2024 by Naelle @ GlutenFreeDIYers · This post may contain affiliate links · 12 Comments

    Jump to Recipe Print Recipe

    I love this moist savory gluten-free carrot muffins recipe with apples for so many reasons!

    • They're easy to make: all the ingredients go in one bowl
    • They're pretty healthy: packed with proteins from flaxseed meal, eggs and optional ad-ins, as well as reduced amount of sugar (check out this post from A Sweet Pea Chef about the benefits of flaxseed meal)
    • They're customizable: you can add pecans, walnuts, raisins, anything you desire to really make them your own
    • They stay moist: gluten-free baked goods tend to be dry, but this recipe adds moisture in a lot of clever ways that keeps these muffins from drying out quickly
    • They aren't crumbly: that's right, it won't disintegrate in your hands!
    gluten-free carrot muffins on the counter, one is cut and the inside reveals pecans, raisins, grated apples and carrots; a grater is in the background

    I make these for a quick breakfast very regularly. It's also a great way to get my picky toddler to eat vegetables and nuts! They're also great healthy snack idea for starting and keeping New Year's resolutions! You can also check out another of my family's favorite muffins: gluten-free blackberry muffins. And if you're in the mood for a treat with deep flavors, you can also try my gluten-free matcha cookies.

    Jump to:
    • Ingredients
    • Instruction
    • Substitutions
    • Variations
    • Equipment
    • Storage
    • Top tip
    • FAQ
    • Related
    • Gluten-Free Carrot Muffins with Apples

    Ingredients

    The secret to gluten-free baking is to add ingredients that will keep the baked goods moist. Sugars do this naturally since their hydroxyl groups form intermolecular forces with water. However, in this recipe, I wanted to reduce sugar... I replaced some with molasses which adds wonderful flavor and moisture. I am also using flaxseed meal, apples and sour cream, which all contribute to more water being retained in the batter.

    Furthermore, my own gluten-free DIY all-purpose mix contains cassava flour, which is one of the highest water absorption flours out there. I also like to add pectin as my hydrocolloid, and it does wonder for moisture! Please note that while I of course recommend using my DIY mix for the above reasons, I have tested these gluten-free carrot muffins successfully with Bob Red Mill 1:1 as well as King Arthur Measure for Measure.

    an overhead shot of ingredients resting on the counter: carrots, flaxseed meal, milk, eggs, molasses, sugar, apples, cinnamon, salt, baking powder, butter and flour.
    • Gluten-free all-purpose flour (click through for appropriate blend, including commercial options)
    • Sugar & molasses
    • Cinnamon
    • Salt
    • Baking powder
    • Baking soda
    • Carrots, grated
    • Apple, grated
    • Butter
    • Milk
    • Eggs
    • Flaxseed meal
    • Sour cream
    • Optional ad-ins, like pecans and raisins

    See recipe card for quantities.

    Instruction

    4 containers on a counter: a red bowl with gluten-free flour, milk mixed with eggs and flaxseed meal, melted butter and a measuring cup with grated carrots and apples

    Combine all dry ingredients in a large mixing bowl. Prepare the melted butter, wet ingredients (including flaxseed meal mixed in milk) and the grated carrots/apples.

    a red bowl filled with gluten-free flour, and unmixed wet ingredients on top

    Pour the wet ingredients into the dry ingredients and mix well.

    a red bowl with a brown gluten-free batter

    Mix until well combined. This batter is thick.

    a red bowl with grated apple and carrot chunks mixed in the gluten-free batter

    Add the carrots, apples and any desired ad-ins.

    a scoop of gluten-free muffin batter being poured into a prepare 12-hole muffin tin

    Scoop a generous amount of batter into each muffin tin.

    gluten-free carrot muffins on a cooling rack

    Bake at 350F for ~25 minutes (until an inserted toothpick only has a few wet crumbs) and let cool fully.

    Hint: resist the urge to take a bite of these moist savory gluten-free carrot muffins with apples as soon as these come out of the oven! I personally really don't like the texture/taste of hot carrots, and they just taste sooo much better fully cooled!

    Substitutions

    • Gluten-free flour - while I love using the DIY mix that I bake with for my business, you can use Bob Red Mill 1:1 or King Arthur Measure for Measure. Make sure your mix has xanthan gum. If you can't have xanthan gum, read through my hydrocolloid post for appropriate replacements.
    • Sour cream - if you don't have sour cream in the fridge, you can use yogurt in a pinch!
    • Dairy-free - use almond milk (or coconut milk), vegan butter and vegan yogurt.
    • Egg-free - there is already a flax egg in this recipe and I do not recommend replacing the remaining eggs. I am working on specifically egg-free recipes (stay tuned), but this isn't the one!

    Variations

    You can add a lot of ad-ins to this recipe!

    • Pecans, walnuts - add 60 grams (~¼ cup) of chopped nuts to the batter
    • Raisins - add ¼ cup of raisins to the batter
    • Apple sauce - you could use apple sauce instead of grated apples, but I would then omit the sour cream

    Equipment

    You will need basic kitchen equipment

    • muffin tray
    • cooling rack
    • grater
    • large bowl

    Storage

    The whole point of this recipe is to keep the savory gluten-free carrot muffins with apples moist beyond day one. That said, the muffins will keep well for up to 3 days at room temperature, covered with a tea towel. Beyond that, please freeze leftovers.

    In fact, if you are the only gluten-free eater in your house and you are making these muffins for quick healthy snacks or breakfast, you could freeze all of them individually wrapped in plastic once fully cooled, for up to a month. Take out of the freezer when ready to use, and thaw to room temperature.

    Top tip

    I have made this gluten-free carrot muffins recipe both with freshly grated carrots, and with storebought pre-grated carrots. Do yourself a favor and grate your own carrots, it's SO much fresher tasting!

    FAQ

    Why do I need to use cold ingredients?

    If you want a beautiful dome on your muffins, cold ingredients are they key! It makes the center of the muffin (which is geographically speaking, the furthest area from the heat in the hot oven) bake at a different rate than the edges. The edges/top bake quickly, giving us that fat-dome!

    Why do I need baking soda?

    Baking soda is a leavening agent, it's a base that will react with acidic ingredients in the batter (like apples and sour cream) and produce gases. It is used here with baking powder, and adds to the texture and taste by neutralizing acidic ingredients.

    Related

    Looking for other ideas for a gluten-free breakfast?

    • a stack of gluten-free buttermilk pancakes on a plate, with strawberries and syrup
      Gluten-Free Buttermilk Pancakes, Super Fluffy
    • three cinnamon rolls on a rack, next to a knife covered in frosting and a cinnamon stick.
      Gluten-Free Cinnamon Rolls, Without Psyllium Husks
    • a muffin tray with baked gluten-free chocolate muffins, with walnuts and chocolate chips sprinkled on.
      Gluten-Free Chocolate Muffins, Also Naturally Dairy-Free!
    • several sliced of bread on a cooling rack next to a bowl of honey
      Gluten-Free Honey Oat Bread for Sandwiches
    three gluten-free carrot muffins on the counter, one has its liner peeled off and a bite taken

    Gluten-Free Carrot Muffins with Apples

    These easy gluten-free carrot muffins with apples are moist beyond the first day, they don't crumble like many gluten-free products, and best of all, they're delicious and guilt-free!
    5 from 7 votes
    Print Pin Rate
    Course: Breakfast, Snack
    Cuisine: American
    Keyword: easy, gluten-free, healthy
    Prep Time: 20 minutes minutes
    Cook Time: 25 minutes minutes
    Total Time: 45 minutes minutes
    Servings: 12
    Calories: 310kcal
    Author: Naelle @ GlutenFreeDIYers
    Cost: 11

    Equipment

    • 1 large bowl
    • 1 grater
    • 1 muffin tray
    • 1 cooling rack

    Ingredients
     
     

    Dry Ingredients

    • 340 grams gluten-free all-purpose flour please click through for recommended blends
    • 90 grams sugar
    • 2 teaspoon baking powder
    • 1 teaspoon baking soda
    • 2 teaspoon cinnamon
    • ½ teaspoon salt

    Wet Ingredients

    • 20 grams flaxseed meal
    • 160 grams milk whole if possible, cold
    • 60 grams molasses
    • 113 grams butter non-salted, soft
    • 70 grams sour cream cold
    • 2 eggs cold

    Add-Ins

    • 200 grams carrots peeled and grated
    • 70 grams apple peeled and grated
    • 60 grams pecans optional, can sub other nut
    • 60 grams raisins optional

    Instructions

    Dry Mix

    • Line a muffin tin with muffin liners, and preheat the oven to 350 °F (177 °C)
    • In a large mixing bowl, combine all the dry ingredients.
    • Mix well.

    Wet Ingredients

    • Prepare the flax egg by mixing the flaxseed meal and milk together.
    • If the butter is cold, microwave it in 10 second increments to soften it.
    • Add the rest of the wet ingredients to the milk.
    • Pour all the wet ingredients into the dry ingredients.
    • Mix well. The batter will be thick.

    Ad-Ins

    • Add the carrots, apple, and any desired ad-ins to the batter. Mix well.

    Baking

    • Using a large ice cream scoop, scoop the batter equally into the muffin liners. It should be a very generous heaping spoon of thick batter.
    • Place in the middle of the oven and bake for 21-26 minutes. The muffins are done when an inserted toothpick comes out with only a few moist crumbs.
    • Cool fully on a cooling rack (I like to cover mine with a tea towel) before eating. Enjoy!

    Notes

    My DIY all-purpose gluten-free flour batter blend is always my preference, that's what I use for my cottage bakery. However, I also tested successfully with Bob Red Mill 1:1, and King Arthur Measure for Measure.

    Nutrition

    Serving: 112g | Calories: 310kcal | Carbohydrates: 43g | Protein: 4.3g | Fat: 14g | Saturated Fat: 6.2g | Cholesterol: 56mg | Potassium: 288mg | Fiber: 2.5g | Sugar: 17g | Vitamin C: 1.7mg | Calcium: 58mg | Iron: 0.7mg

    More Other Gluten-Free Baked Goods

    • a gluten-free almond cupcake on a rack, with its wrapper off and a dome of white swirly frosting
      Gluten-Free White Almond Sour Cream Cupcakes, the Best Wedding Cupcake!
    • a gluten-free apple cider donut on a cooling rack, with another being held by a hand, cut in half to show an airy inside.
      Baked Gluten-Free Apple Cider Donuts, With an Apple Filling
    • a cooling rack with a stack of 3 gluten free white chocolate chips macadamia cookies, with crumbs
      Gluten-Free White Chocolate Macadamia Cookies, so Chewy!
    • a gluten-free vegan birthday chocolate cake on a stand, with sprinkles and piped chocolate rosettes.
      Gluten-Free Vegan Birthday Cake, a Top-8 Allergen Free Recipe!

    Reader Interactions

    Comments

      Leave a Reply Cancel reply

      Your email address will not be published. Required fields are marked *

      Recipe Rating




    1. Kathleen

      December 27, 2023 at 10:57 pm

      5 stars
      These healthy, nutritious and delicious muffins are the perfect breakfast to start the day with.

      Reply
      • Naelle @ GlutenFreeDIYers

        December 27, 2023 at 11:44 pm

        Yes! We love them for breakfast too! Really filling!

        Reply
    2. Kathryn

      December 27, 2023 at 11:34 pm

      5 stars
      These muffins were delicious and I love how they were filled with healthy ingredients! Will be making these again soon for my littles ones :)

      Reply
      • Naelle @ GlutenFreeDIYers

        December 27, 2023 at 11:44 pm

        Awesome, so glad your kiddos will get to enjoy them!

        Reply
    3. nancy

      December 28, 2023 at 1:28 am

      5 stars
      my kid loves this carrot muffin for her breakfast. Thanks for the easy recipe

      Reply
    4. Tracy

      December 28, 2023 at 3:02 am

      5 stars
      These are perfect for the kids! Love the combo of apples and carrots, such a great mom approved muffin!

      Reply
    5. Meg

      January 13, 2024 at 12:28 am

      5 stars
      It would be helpful to list all ingredients in American measures. I want to do this recipe but I got mixed up!

      Reply
      • Naelle @ GlutenFreeDIYers

        January 13, 2024 at 1:24 am

        Hi Meg! For all my non-bread recipes, I give the option to use volume measurements (highlight US customary in the recipe card, next to the ingredient section).

        Reply
    6. kara couch

      January 13, 2024 at 12:42 am

      5 stars
      Such a great, easy recipe for novice gluten free bakers (like me). Easy to make, and they are guilt free. Love it! I also enjoyed the information on various flours and why it’s important to weigh then vs measure. I feel like this is my own “lesson in chemistry”. Thank you!!

      Reply
      • Naelle @ GlutenFreeDIYers

        January 13, 2024 at 1:25 am

        Thanks so much! There's so much chemistry in baking, we're all little scientists :)

        Reply
    7. Meg

      January 13, 2024 at 5:11 am

      5 stars
      I found the conversion! Awesome!

      Reply
      • Naelle @ GlutenFreeDIYers

        January 13, 2024 at 5:18 am

        Yay!

        Reply

    Primary Sidebar

    Naelle wearing a green t-shirt, holding her baby and smiling.

    Hi, I'm Naëlle, a chemistry teacher, mom and cottage food baker. I specialize in all things gluten-free! My goal is to give you all the scientific information you need to customize any recipes you find here!

    More about me →

    Popular

    • two slices of gluten-free raisin cinnamon swirl bread on a bamboo bread cutting board
      Gluten-Free Cinnamon Swirl Bread With Golden Raisins
    • a glass jar on a counter, filled with gluten-free bread flour, next to a rolling pin.
      How to Make Gluten-Free Bread Flour
    • a closeup of gluten-free cinnamon rolls rising, perfectly swirled.
      Gluten-Free Bread Baking: The Best Science-Backed Tips and Tricks
    • a gluten-free star bread pastry on a parchment paper sheet, with cinnamon and maple
      Gluten-Free Star Bread With Homemade Laminated Puff Pastry

    Footer

    ↑ back to top

    About

    • Privacy Policy

    Newsletter

    • Sign Up! for emails and updates

    Contact

    • Contact

    Gluten-Free DIYers - Copyright © 2025